1 0:00:00,00 --> 0:00:03,07 2 0:00:03,07 --> 0:00:13,12 In the Serial Dilution video, I showed you how to include serial dilution tasks in a protocol. Now I’ll show you how to add plate replication tasks in the protocol. 3 0:00:13,12 --> 0:00:19,01 Before I do that, let’s briefly review what we’ve done so far in the protocol. 4 0:00:19,01 --> 0:00:29,19 In the previous two videos, I added tasks to pick two or three samples from a set of six source plates and dispensed them into the first column of the destination plate. 5 0:00:29,19 --> 0:00:38,10 Then I added tasks to dilute the column serially across the destination plate. Now I want to make two copies of the diluted plate. 6 0:00:38,10 --> 0:00:46,18 Let’s also check where things are at the devices. At the end of the serial dilution routine, the destination plate is at Bravo deck location 5. 7 0:00:46,18 --> 0:00:54,08 The tips used for serial dilution are at deck location 7. I’ll reuse the same tips during the replication process. 8 0:00:54,08 --> 0:00:59,00 The new plates we’ll use for replication are stacked at Bravo deck location 1. 9 0:00:59,00 --> 0:01:06,20 During the plate replication process, the plates for replication will downstack from Bravo deck location 1 and go to location 8. 10 0:01:06,20 --> 0:01:12,04 I’ll use the tips in the tipbox at deck location 7. 11 0:01:12,04 --> 0:01:15,20 OK, let’s add the replication tasks in the protocol. 12 0:01:15,20 --> 0:01:25,08 Before I do that, I have to get things ready. Once again, I want to hold back the plates I will use for replication until I’m ready, so I'll add a Spawn Process task after the 13 0:01:25,08 --> 0:01:30,15 Serial Dilution subprocess to initiate the Replication Plate process. 14 0:01:30,15 --> 0:01:35,11 And I'll select Replication Plate, because that’s the process I want to spawn. 15 0:01:35,11 --> 0:01:45,08 Next, I need to specify where the replication plates will be. Remember that in the Replication plan, the replication plates are stacked at Bravo deck location 1. 16 0:01:45,08 --> 0:01:56,28 I need to downstack each from location 1 for the replication. So I'll add a Downstack task in the Replication Plate process, and select Bravo deck location 1. 17 0:01:56,28 --> 0:02:07,25 For each Bravo Downstack and Upstack task, I also have to add a Scan Stack task in the Startup Protocol. So I'm going to go to the Startup Protocol and do that. 18 0:02:07,25 --> 0:02:10,18 I'll click Add Process… 19 0:02:10,18 --> 0:02:15,04 …then add Scan Stack. 20 0:02:15,04 --> 0:02:23,06 Over here in the Properties area, I'll select Bravo and location 1. 21 0:02:23,06 --> 0:02:26,10 OK, I'll go back to the Main Protocol. 22 0:02:26,10 --> 0:02:35,05 There is one last thing I have to do. After the replication plate is downstacked, I have to specify where it will go. In the plan, I specified location 8. 23 0:02:35,05 --> 0:02:47,16 So I'll add a Place Plate in the Replication Plate process, select Bravo, and select 8. 24 0:02:47,16 --> 0:03:01,07 Now I’m going to add the replication subprocess. 25 0:03:01,07 --> 0:03:10,02 I'll add a Bravo Subprocess… 26 0:03:10,02 --> 0:03:23,12 I'll name it Replicate. 27 0:03:23,12 --> 0:03:35,00 And besides the Destination plate, the Replication plate is also involved in this subprocess. So I'll copy the Replicate subprocess and paste it in the Replicate Plate process. 28 0:03:35,00 --> 0:03:42,21 Remember that we need some tips for this part of the protocol as well, and that I want to reuse the tips that were used for serial dilution. 29 0:03:42,21 --> 0:03:58,24 So I'll paste another copy of the Replication subprocess in the Tipbox process. 30 0:03:58,24 --> 0:04:03,03 Now I’m ready to add tasks in the replication subprocess. 31 0:04:03,03 --> 0:04:15,18 The first task I’m going to add is the Tips On task… I'll select the Tipbox for Serial Dilution and Replication. 32 0:04:15,18 --> 0:04:22,02 And over to Well selection… I want the entire plate, which is already done. 33 0:04:22,02 --> 0:04:32,12 Notice I didn’t add the Set Head Mode task. This is because with each new subprocess, the default channel selection is all channels, which is what I want. 34 0:04:32,12 --> 0:04:44,22 With the tips on, I can start to aspirate… from the Destination plate. 35 0:04:44,22 --> 0:04:52,10 I want to aspirate 20 microliters. My plan is to dispense 10 in each of the two replication plates. 36 0:04:52,10 --> 0:05:00,21 I’ll use the defaults for the remaining parameters. 37 0:05:00,21 --> 0:05:07,13 I'll add the Dispense task. I want to dispense into the replication plate, so I'll select that. 38 0:05:07,13 --> 0:05:18,26 And I want to dispense 10 microliters into each plate. So far, I’ve aspirated once and picked up 20 microliters and dispensed once and dropped 10 microliters. 39 0:05:18,26 --> 0:05:25,03 I need a way to dispense into the second replication plate. I can add three tasks to help me do this. 40 0:05:25,03 --> 0:05:28,05 First, I'll add the Change Instance task. 41 0:05:28,05 --> 0:05:33,22 For Plate to change, I'll select the Replication Plate, because that’s the labware for this task. 42 0:05:33,22 --> 0:05:43,04 Then for Spawn control, I'll select Spawn new plates when task runs, so that every time this task runs, a new replication plate will be used. 43 0:05:43,04 --> 0:05:51,11 The other spawn control selections are explained in detail in the VWorks Automation Control User Guide. 44 0:05:51,11 --> 0:06:01,05 Next, I need to add the two Loop tasks. The Loop tasks tell the software to repeat the tasks within the two Loop tasks a specified number of times. 45 0:06:01,05 --> 0:06:10,03 I want to dispense twice, so I'll add the first Loop task just before the Dispense task. 46 0:06:10,03 --> 0:06:20,00 For the Number of times to loop, I'll specify 2. I'll leave the other parameter alone, because I don’t need to change tips after every dispense. 47 0:06:20,00 --> 0:06:26,07 I'll also add the Loop End task after the Dispense task so that only the Dispense task is repeated. 48 0:06:26,07 --> 0:06:32,07 At the end of the replication, I want to remove the tips. So I'll add the Tips Off task. 49 0:06:32,07 --> 0:06:39,05 I want to put the used tips back in the same box, so I select the Tips for Serial Dilution and Replication. 50 0:06:39,05 --> 0:06:46,07 And I’m going to clear the check box for Mark tips as used, because I will reuse them for the next round of replication. 51 0:06:46,07 --> 0:06:53,14 Finally, I want to make sure all of the tips are removed. 52 0:06:53,14 --> 0:07:02,24 Now it’s time to upstack the plates so that they are put away at the end of their processes. 53 0:07:02,24 --> 0:07:08,05 I'll first upstack the Destination plate. 54 0:07:08,05 --> 0:07:20,04 It’s going back to BenchCel stacker 2. 55 0:07:20,04 --> 0:07:24,15 Then, I'll upstack the Source plate. 56 0:07:24,15 --> 0:07:33,15 It’s going back to BenchCel stacker 4. 57 0:07:33,15 --> 0:07:37,27 And I'll upstack the Tipbox for Serial Dilution and Replication. 58 0:07:37,27 --> 0:07:40,28 It’s going back to BenchCel stacker 6. 59 0:07:40,28 --> 0:07:44,05 Lastly, I want to upstack the Replication Plate. 60 0:07:44,05 --> 0:07:52,20 It downstacked from Bravo location 1, and I want to upstack it at Bravo location 4. 61 0:07:52,20 --> 0:08:02,14 Again, I need to add a Scan Stack task in Startup Protocol to cover this Bravo Upstack task. 62 0:08:02,14 --> 0:08:08,17 So I'll go over to the Startup Protocol and set this up for the Bravo device, at location 4. 63 0:08:08,17 --> 0:08:16,00 Let’s now return to the Main Protocol… With all of the labware now put away, there is one last thing I need to do to the protocol. 64 0:08:16,00 --> 0:08:24,07 I am going to go to Protocol Options… And clear the check box for Pipette plates in instance order, so that all of the liquid-handling for hit-picking 65 0:08:24,07 --> 0:08:33,19 will be finished before liquid-handling tasks for the serial dilution starts, and serial dilution must be finished before the replication can begin. 66 0:08:33,19 --> 0:08:36,06 And with that, my protocol is finished! 67 0:08:36,06 --> 0:08:39,13